Structure of PDB 5xob Chain Z

Receptor sequence
>5xobZ (length=417) Species: 224325 (Archaeoglobus fulgidus DSM 4304) [Search protein sequence]
MRVWVGIDDTDSSRGMCTTYLAVLAMERVERELGKVIGFPRLIRLNPTIP
RGNGAVSFLVEVDDVGELVDVVNEVIIEHAMLDDEKTNPGAVFVDEELAV
KLKPFADKAIKDVLQIDEALFVIGKYFIPHLRHKKGRGLIGALAAVGAEL
EDFTLELIAYRYPERFGTEREYDEESFFDMDYELYPQTFDNVDWCNDVVV
CIPNTPCPVLYGIRGESVEALYKAMESVKTEPVDRRMIFVTNHATDMHLI
GEEEVHRLENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEP
TKQFRNVIRLLRKGDVVEVYGSMKKDTINLEKIQIVELAEIWVEKNPICP
SCGRRMESAGRGQGFRCKKCRTKADEKLREKVERELQPGFYEVPPSARRH
LSKPLIRMNVEGRHIFR
3D structure
PDB5xob Structure of tRNA-Modifying Enzyme TiaS and Motions of Its Substrate Binding Zinc Ribbon.
ChainZ
Resolution2.48 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 6.3.4.22: tRNA(Ile)(2)-agmatinylcytidine synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN Z C352 C355 C373 C349 C352 C370
BS02 MG Z D8 T18 G57 D8 T18 G54
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0016879 ligase activity, forming carbon-nitrogen bonds
Biological Process
GO:0002101 tRNA wobble cytosine modification
GO:0008033 tRNA processing
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5xob, PDBe:5xob, PDBj:5xob
PDBsum5xob
PubMed30121296
UniProtO28025|TIAS_ARCFU tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS (Gene Name=tiaS)

[Back to BioLiP]