Structure of PDB 5k0y Chain Z

Receptor sequence

>5k0yZ (length=150) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIG
VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKH
LERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA

3D structure

PDB

5k0y eIF3 Peripheral Subunits Rearrangement after mRNA Binding and Start-Codon Recognition.

Chain

Resolution

5.8 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Z	G2 R3 M4 H5 G8 K9 G10 L11 S12 Q13 S14 A15 L16 R20 V22 S48 Q49 G51 V52 R55 Q62 R64 F65 N69 K70 L72 R73 S77 E86 D87 H90 K94 A97 V98 H101 R104 N105 K107 D108 D110 F113 R114 I116 S120 R121 R124 L125 R127 Y128 K132	G1 R2 M3 H4 G7 K8 G9 L10 S11 Q12 S13 A14 L15 R19 V21 S47 Q48 G50 V51 R54 Q61 R63 F64 N68 K69 L71 R72 S76 E85 D86 H89 K93 A96 V97 H100 R103 N104 K106 D107 D109 F112 R113 I115 S119 R120 R123 L124 R126 Y127 K131

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0070181	small ribosomal subunit rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:5k0y, PDBe:5k0y, PDBj:5k0y
PDBsum	5k0y
PubMed	27373335
UniProt	G1SP51\|RS13_RABIT Small ribosomal subunit protein uS15 (Gene Name=RPS13)

[Back to BioLiP]