Structure of PDB 8fon Chain YZ

Receptor sequence
>8fonYZ (length=203) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MEYRLKAYYREGEKPSALRRAGKLPGVMYNRHLNRKVYVDLVEFDKVFRQ
ASIHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYV
PLRFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSL
HASDLKLPPGVELAVSPEETIAAVVPPEDVEKLAEEAAAEVAEPEVIKKG
KEE
3D structure
PDB8fon Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches.
ChainYZ
Resolution3.64 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna YZ E193 K198 K201 E202 E203 E193 K198 K201 E202 E203
BS02 rna YZ Q118 I146 S149 H151 E169 T170 P176 I197 K199 G200 K201 Q118 I146 S149 H151 E169 T170 P176 I197 K199 G200 K201
BS03 rna YZ P15 R19 Y29 N30 N34 R72 Q73 R79 H85 F89 P15 R19 Y29 N30 N34 R72 Q73 R79 H85 F89
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8fon, PDBe:8fon, PDBj:8fon
PDBsum8fon
PubMed36924943
UniProtQ5SHZ1|RL25_THET8 Large ribosomal subunit protein bL25 (Gene Name=rplY)

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