Structure of PDB 5dfe Chain YZ

Receptor sequence
>5dfeYZ (length=201) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MEYRLKAYYREGEKPSALRRAGKLPGVMYNRHLNRKVYVDLVEFDKVFRQ
ASIHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYV
PLRFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSL
HASDLKLPPGVELAVSPEETIAAVVPPEDVEKLAEEAAAEVAEPEVIKKG
K
3D structure
PDB5dfe Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
ChainYZ
Resolution3.09998 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna YZ K198 K201 K198 K201
BS02 rna YZ K46 H151 I197 K199 G200 K201 K46 H151 I197 K199 G200 K201
BS03 rna YZ R10 P15 R19 V27 Y29 N30 R31 N34 R72 Q73 R79 E84 H85 F89 R10 P15 R19 V27 Y29 N30 R31 N34 R72 Q73 R79 E84 H85 F89
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5dfe, PDBe:5dfe, PDBj:5dfe
PDBsum5dfe
PubMed27681416
UniProtQ5SHZ1|RL25_THET8 Large ribosomal subunit protein bL25 (Gene Name=rplY)

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