Structure of PDB 6i7o Chain YH

Receptor sequence

>6i7oYH (length=172) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

MAHFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHK
VKKASGEIVSINQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRV
AAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKF
PLPHRVQKSTKTFSYKRPSTFY

3D structure

PDB

6i7o Collided ribosomes form a unique structural interface to induce Hel2-driven quality control pathways.

Chain

Resolution

5.3 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	YH	M1 A2 Q63 N65 H68 K71 R84 H88 Y91 K92 Q108 A111 A112 R113 R115 R117 T132 R137 Y139 K146 P153 H154 Q157 K158 Y165 P168 S169 T170 F171	M1 A2 Q63 N65 H68 K71 R84 H88 Y91 K92 Q108 A111 A112 R113 R115 R117 T132 R137 Y139 K146 P153 H154 Q157 K158 Y165 P168 S169 T170 F171
BS02	rna	YH	R13 Q46 H49 K50 V51 K52 K53 R119	R13 Q46 H49 K50 V51 K52 K53 R119

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6i7o, PDBe:6i7o, PDBj:6i7o
PDBsum	6i7o
PubMed	30609991
UniProt	P0CX23\|RL20A_YEAST Large ribosomal subunit protein eL20A (Gene Name=RPL20A)

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