Structure of PDB 6nta Chain YG

Receptor sequence

>6ntaYG (length=181) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]

PLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDAR
ILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWI
FLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDA
LRGMDIAVVTTAETDEEARALLELLGFPFRK

3D structure

PDB

6nta Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.

Chain

Resolution

3.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	YG	K36 V38 N40 G42 G44 K74 I77 F80 L82 I88 R91 S124 D126 R128 N130 N132 G134 L135 G154 D156	K35 V37 N39 G41 G43 K73 I76 F79 L81 I87 R90 S123 D125 R127 N129 N131 G133 L134 G153 D155
BS02	rna	YG	P2 N27 W29 E30 Q66 K67 P68 A69 V70 R91 V92 T93 R95 R96 R98	P1 N26 W28 E29 Q65 K66 P67 A68 V69 R90 V91 T92 R94 R95 R97

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Cellular Component

External links

PDB	RCSB:6nta, PDBe:6nta, PDBj:6nta
PDBsum	6nta
PubMed	33016876
UniProt	Q5SHQ0\|RL5_THET8 Large ribosomal subunit protein uL5 (Gene Name=rplE)

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