Structure of PDB 8fom Chain Y3

Receptor sequence
>8fomY3 (length=59) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
PRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVA
HLVRVEVVE
3D structure
PDB8fom Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches.
ChainY3
Resolution3.58 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Y3 K10 S11 I13 G14 K17 A21 A22 K24 A25 R29 L31 P41 A42 G45 N46 K49 K9 S10 I12 G13 K16 A20 A21 K23 A24 R28 L30 P40 A41 G44 N45 K48
BS02 rna Y3 Q19 H52 Q18 H51
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8fom, PDBe:8fom, PDBj:8fom
PDBsum8fom
PubMed36924943
UniProtQ5SHQ6|RL30_THET8 Large ribosomal subunit protein uL30 (Gene Name=rpmD)

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