Structure of PDB 6zvk Chain Y2

Receptor sequence

>6zvkY2 (length=169) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

ENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR
SFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFG
IQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRIS
KEEAMRWFQQKYDGIILPG

3D structure

PDB

6zvk The Halastavi arva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism.

Chain

Resolution

3.49 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Y2	C21 N23 C25 S51 A53 R54 F60 H71 N97 N98 S100 D101 T102 F107 G127 D129 Y131	C13 N15 C17 S43 A45 R46 F52 H63 N89 N90 S92 D93 T94 F99 G119 D121 Y123
BS02	rna	Y2	M12 Q46 T47 V49 T73 R75 G138 S140 I141 D143 I151 A153 K154 H155	M4 Q38 T39 V41 T65 R67 G130 S132 I133 D135 I143 A145 K146 H147

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6zvk, PDBe:6zvk, PDBj:6zvk
PDBsum	6zvk
PubMed	33296660
UniProt	G1TUB8\|RL11_RABIT Large ribosomal subunit protein uL5 (Gene Name=RPL11)

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