Structure of PDB 6xzb Chain Y2

Receptor sequence
>6xzbY2 (length=62) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
KAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVA
RVKTLLNEKAGA
3D structure
PDB6xzb Insights into the improved macrolide inhibitory activity from the high-resolution cryo-EM structure of dirithromycin bound to the E. coli 70S ribosome.
ChainY2
Resolution2.54 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Y2 K2 K4 R7 Q39 S40 H41 R47 R48 A51 R52 K54 T55 N58 K1 K3 R6 Q38 S39 H40 R46 R47 A50 R51 K53 T54 N57
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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External links
PDB RCSB:6xzb, PDBe:6xzb, PDBj:6xzb
PDBsum6xzb
PubMed32144191
UniProtP0A7M6|RL29_ECOLI Large ribosomal subunit protein uL29 (Gene Name=rpmC)

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