Structure of PDB 8pj1 Chain Y

Receptor sequence

>8pj1Y (length=141) Species: 9606 (Homo sapiens) [Search protein sequence]

PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPV
LLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASK
KEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR

3D structure

PDB

8pj1 Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining

Chain

Resolution

3.4 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Y	Q11 V12 F13 R15 K16 K17 T18 V22 H24 K26 E43 R45 R69 R71 K73 G74 G75 G76 H77 V78 A79 R125 R126 C127 E128 S129 K130 K131 F132 G136 R138 A139 R140 Y141 Q142 K143 S144 Y145 R146	Q6 V7 F8 R10 K11 K12 T13 V17 H19 K21 E38 R40 R64 R66 K68 G69 G70 G71 H72 V73 A74 R120 R121 C122 E123 S124 K125 K126 F127 G131 R133 A134 R135 Y136 Q137 K138 S139 Y140 R141

External links

PDB	RCSB:8pj1, PDBe:8pj1, PDBj:8pj1
PDBsum	8pj1
PubMed
UniProt	P62249\|RS16_HUMAN Small ribosomal subunit protein uS9 (Gene Name=RPS16)