Structure of PDB 7c08 Chain Y

Receptor sequence
>7c08Y (length=178) Species: 284812 (Schizosaccharomyces pombe 972h-) [Search protein sequence]
VNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHEPNGKKFT
QRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEE
SAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNF
MHAKKPSPQLLRDLVLAQRKYLALNAAE
3D structure
PDB7c08 Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
ChainY
Resolution3.35 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Y S19 F20 K23 C27 R28 H29 C33 Y34 E146 C148 R150 Q151 R159 C163 N164 F165 S4 F5 K8 C12 R13 H14 C18 Y19 E131 C133 R135 Q136 R144 C148 N149 F150
BS02 ZN Y C18 C27 C33 H37 C3 C12 C18 H22
BS03 ZN Y C149 C157 C163 H167 C134 C142 C148 H152
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0030628 pre-mRNA 3'-splice site binding
GO:0046872 metal ion binding
Biological Process
GO:0000389 mRNA 3'-splice site recognition
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0045292 mRNA cis splicing, via spliceosome
Cellular Component
GO:0000243 commitment complex
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005829 cytosol
GO:0071004 U2-type prespliceosome
GO:0089701 U2AF complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7c08, PDBe:7c08, PDBj:7c08
PDBsum7c08
PubMed32958768
UniProtQ09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit (Gene Name=SPAP8A3.06)

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