Structure of PDB 5xnl Chain Y

Receptor sequence

>5xnlY (length=219) Species: 3888 (Pisum sativum) [Search protein sequence]

GSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNR
ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDY
LGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD
PLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH
LSDPVNNNAWSYATNFVPG

3D structure

PDB

5xnl Structure and assembly mechanism of plant C2S2M2-type PSII-LHCII supercomplex

Chain

Resolution

2.7 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CLA	Y	A49 L51 F192	A37 L39 F180
BS02	CHL	Y	W222 A225 T226 F228 V229	W210 A213 T214 F216 V217
BS03	CHL	Y	W46 T48	W34 T36
BS04	CHL	Y	V22 K23 Y24 L25 G26 Y44 W46	V10 K11 Y12 L13 G14 Y32 W34
BS05	CLA	Y	G42 D43 Y44 W46 D47 L51 S52 N61 R62 E65 R185 M188 F189 F192	G30 D31 Y32 W34 D35 L39 S40 N49 R50 E53 R173 M176 F177 F180
BS06	CLA	Y	L64 H68 F195	L52 H56 F183
BS07	CLA	Y	L74 L77 G78 F81 P82 F92 Q103 L110 Y112 L113	L62 L65 G66 F69 P70 F80 Q91 L98 Y100 L101
BS08	CHL	Y	S117 L118 V119 H120 A121 Q122 S123 A126	S105 L106 V107 H108 A109 Q110 S111 A114
BS09	CHL	Y	W71 L110 V119 I127 T130 Q131	W59 L98 V107 I115 T118 Q119
BS10	CHL	Y	F98 G101 S102 Q131 F195	F86 G89 S90 Q119 F183
BS11	CHL	Y	R70 W71 L74 V138 Y141 R142 G146 P147 L148 P157 S160 F161 P163	R58 W59 L62 V126 Y129 R130 G134 P135 L136 P145 S148 F149 P151
BS12	CHL	Y	L64 I67 H68 W71 Q131 M135 G136 E139 R142 I143 F192	L52 I55 H56 W59 Q119 M123 G124 E127 R130 I131 F180
BS13	CLA	Y	R70 M73 Y156 P157 G158 F161 L166 F173 L176 K179 E180	R58 M61 Y144 P145 G146 F149 L154 F161 L164 K167 E168
BS14	CLA	Y	W16 K179 K182 N183 L186	W4 K167 K170 N171 L174
BS15	CLA	Y	K179 N183 L186	K167 N171 L174
BS16	CLA	Y	F189 F192 G193 V196 Q197 V200 N208 L209 H212 N220 A221 Y224	F177 F180 G181 V184 Q185 V188 N196 L197 H200 N208 A209 Y212
BS17	CLA	Y	H212 L213 P216 W222	H200 L201 P204 W210

Gene Ontology

	Biological Process
GO:0009765	photosynthesis, light harvesting

	Cellular Component
GO:0016020	membrane

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:5xnl, PDBe:5xnl, PDBj:5xnl
PDBsum	5xnl
PubMed	28839073
UniProt	P27490\|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic (Gene Name=CAB8)

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