Structure of PDB 5f2v Chain Y

Receptor sequence
>5f2vY (length=182) Species: 1415167 (Bacillus subtilis PY79) [Search protein sequence]
DKQWERFLVPYRQAVEELKVKLKGIRTLYEYEDDHSPIEFVTGRVKPVAS
ILEKARRKSIPLHEIETMQDIAGLRIMCQFVDDIQIVKEMLFARKDFTVV
DQSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYKYSGNI
PEKVKLRLQRASEAASRLDEEMSEIRGEVQEA
3D structure
PDB5f2v Catalytic mechanism and allosteric regulation of an oligomeric (p)ppGpp synthetase by an alarmone.
ChainY
Resolution2.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.6.5: GTP diphosphokinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 APC Y R46 K48 S52 K56 G75 L76 R77 Q141 R44 K46 S50 K54 G73 L74 R75 Q126
BS02 MG Y D72 E139 D70 E124
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0005525 GTP binding
GO:0008728 GTP diphosphokinase activity
GO:0016301 kinase activity
GO:0046872 metal ion binding
Biological Process
GO:0015969 guanosine tetraphosphate metabolic process
GO:0015970 guanosine tetraphosphate biosynthetic process
GO:0016310 phosphorylation

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Molecular Function
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Biological Process
External links
PDB RCSB:5f2v, PDBe:5f2v, PDBj:5f2v
PDBsum5f2v
PubMed26460002
UniProtO31611|YJBM_BACSU GTP pyrophosphokinase YjbM (Gene Name=yjbM)

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