Structure of PDB 4d5l Chain Y

Receptor sequence

>4d5lY (length=122) Species: 9986 (Oryctolagus cuniculus)

TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPD
VIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTS
RKQRKERKNRMKKVRGTAKANV

3D structure

• PDB: 4d5l Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.
• Chain: Y
• Resolution: 9.0 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Y	I7 R8 T9 R10 K11 F12 T14 K21 A33 P36 K37 M47 Y48 K49 F58 G59 F60 R61 F64 D77 H89 K100 T102 S103 R104 K108 K111 N112 K115 K116 R118 G119 T120 K122 A123	I4 R5 T6 R7 K8 F9 T11 K18 A30 P33 K34 M44 Y45 K46 F55 G56 F57 R58 F61 D74 H86 K97 T99 S100 R101 K105 K108 N109 K112 K113 R115 G116 T117 K119 A120

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0022626 cytosolic ribosome
• GO:0044391 ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4d5l, PDBe:4d5l, PDBj:4d5l
• PDBsum: 4d5l
• PubMed: 25601755
• UniProt: G1TS40