Structure of PDB 1xbp Chain Y

Receptor sequence
>1xbpY (length=73) Species: 1299 (Deinococcus radiodurans) [Search protein sequence]
MQKDLHPKAVPCKIIYQGQVVMETMSTRPEIHVDVWSGVHPFWTGEERFL
DTEGRVDKFNKRFGDSYRRGSKK
3D structure
PDB1xbp Inhibition of peptide bond formation by pleuromutilins: the structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with tiamulin.
ChainY
Resolution3.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna Y T27 V39 T27 V39
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:1xbp, PDBe:1xbp, PDBj:1xbp
PDBsum1xbp
PubMed15554968
UniProtQ9RW44|RL31_DEIRA Large ribosomal subunit protein bL31 (Gene Name=rpmE)

[Back to BioLiP]