Structure of PDB 1vqp Chain Y

Receptor sequence

>1vqpY (length=142) Species: 2238 (Haloarcula marismortui) [Search protein sequence]

TELQARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWR
KPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE
GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLNPTYVEV

3D structure

PDB

1vqp Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction.

Chain

Resolution

2.25 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Y	R115 Q119 R120 H121 R122 K125 P126 Q127 F128 R130 Q131 D132 H134 K135 K136 K137 R138 V139 S142 W143 R144 K145 G148 Q149 L150 S151 K152 R154 R155 G156 I157 K158 G159 K160 V164 E165 A166 G167 F168 R169 S170 P171 T172 R175 G176 H178 P179 R186 H188 R204 A206 S207 K208 V209 G210 A211 R212 K213 N230 Y233	R21 Q25 R26 H27 R28 K31 P32 Q33 F34 R36 Q37 D38 H40 K41 K42 K43 R44 V45 S48 W49 R50 K51 G54 Q55 L56 S57 K58 R60 R61 G62 I63 K64 G65 K66 V70 E71 A72 G73 F74 R75 S76 P77 T78 R81 G82 H84 P85 R92 H94 R110 A112 S113 K114 V115 G116 A117 R118 K119 N136 Y139
BS02	MG	Y	H133 K136 K137 V139	H39 K42 K43 V45

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0003677	DNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006281	DNA repair
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:1vqp, PDBe:1vqp, PDBj:1vqp
PDBsum	1vqp
PubMed	16285925
UniProt	P12736\|RL32_HALMA Large ribosomal subunit protein eL32 (Gene Name=rpl32e)