Structure of PDB 1kd1 Chain Y

Receptor sequence
>1kd1Y (length=82) Species: 2238 (Haloarcula marismortui) [Search protein sequence]
ERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINE
AAWARGRANTPSKIRVRAARFEEEGEAIVEAE
3D structure
PDB1kd1 The structures of four macrolide antibiotics bound to the large ribosomal subunit.
ChainY
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Y R8 T11 P13 R15 R18 A19 E20 P21 N22 H23 D27 K28 M30 R34 K39 H40 R49 L50 N55 E56 W59 R61 R63 N65 S68 K69 R2 T5 P7 R9 R12 A13 E14 P15 N16 H17 D21 K22 M24 R28 K33 H34 R43 L44 N49 E50 W53 R55 R57 N59 S62 K63
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:1kd1, PDBe:1kd1, PDBj:1kd1
PDBsum1kd1
PubMed12150912
UniProtP18138|RL31_HALMA Large ribosomal subunit protein eL31 (Gene Name=rpl31e)

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