Structure of PDB 8apn Chain Xd

Receptor sequence

>8apnXd (length=413) Species: 353565 (Polytomella magna) [Search protein sequence]

YRNKVTIEYIKLKEPENDDYATRDPTNYAQLLGAISISRHLDRTTYLYET
FKDKFDTIHYVTALTKLPGLVHYRGADLVMRDGVQWSEGVKPFWQKPNAQ
PRKHLLPKAQGLLSKLEEQFPPHLNNLFPRQTANLIWAYGQLKRKQVVAA
CPFLGDFLLSLRRDNFLALDKHATGADYAQIVKGLANLQTAGSPADEDTR
ALIEDFVDQLTQEMLLRRGHARLLDAREAQSILWGLGKLNRRKNTAIIDV
LCDVVLAGVNSLTPTALAGAFSALAKLGHSSRTDVFEAMAKGYHLQTTLM
SPQDVSLTVCACADLGFRDDNLLKICGLKAADMLGEFSNASLAWLMAGFG
RLGYNHEAFFSAVNKSVLAEPVVEVEPGFAWRVLSAYAGSGRKDSESLKV
CGRITEAFLAKLY

3D structure

PDB

8apn Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.

Chain

Resolution

3.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Xd	S98 R101 I120 K128 H134 R136 R143 W148 G151 K153 F155 Q157 R164 H166 R192 W199 A238 D239 Q242 E290 W296 Q365 L369	S36 R39 I58 K66 H72 R74 R81 W86 G89 K91 F93 Q95 R102 H104 R130 W137 A176 D177 Q180 E228 W234 Q303 L307
BS02	rna	Xd	Y63 N65	Y1 N3

External links

PDB	RCSB:8apn, PDBe:8apn, PDBj:8apn
PDBsum	8apn
PubMed	36253367

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