Structure of PDB 8apo Chain Xa

Receptor sequence

>8apoXa (length=199) Species: 353565 (Polytomella magna) [Search protein sequence]

IEEYYVVPPACPPPPHNPKTLKYVPKLNRTQIIARVYEAKTPTELENSAL
GKKFFSEFAAVAKLVRLSQLRRANVYNSRDDAMCVSIYNTSVRVADKLLH
LSSDEELCGLIWALSQLPYPEYENLVDRSLQILLEEDKPLKTGSSLAVSR
AAAGLASLGRWDASTWEVLVPLLRKNVQEGKEVELSNLALGLYDARETV

3D structure

PDB

8apo Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites

Chain

Resolution

3.2 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Xa	K71 T72 V76 K78 E98 N99 L102 K104 K105 F106 M135 S138 R145 K149	K19 T20 V24 K26 E46 N47 L50 K52 K53 F54 M83 S86 R93 K97

External links

PDB	RCSB:8apo, PDBe:8apo, PDBj:8apo
PDBsum	8apo
PubMed	36253367

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