Structure of PDB 4ypb Chain XE

Receptor sequence
>4ypbXE (length=154) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
PETDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEV
PLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVI
AGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERL
RKGE
3D structure
PDB4ypb Defining the mRNA recognition signature of a bacterial toxin protein.
ChainXE
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna XE R14 T16 A17 R18 M19 Q20 G22 R24 R25 K47 P49 A86 K92 A94 A95 T98 A102 L119 T120 K121 E122 L123 S125 R126 N127 N130 R13 T15 A16 R17 M18 Q19 G21 R23 R24 K46 P48 A85 K91 A93 A94 T97 A101 L118 T119 K120 E121 L122 S124 R125 N126 N129
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:4ypb, PDBe:4ypb, PDBj:4ypb
PDBsum4ypb
PubMed26508639
UniProtQ5SHQ5|RS5_THET8 Small ribosomal subunit protein uS5 (Gene Name=rpsE)

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