Structure of PDB 5j4d Chain XB

Receptor sequence
>5j4dXB (length=101) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence]
MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLGGEKTVVGTP
VVEGASVVAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIR
G
3D structure
PDB5j4d Structural Basis for Translation Termination on a Pseudouridylated Stop Codon.
ChainXB
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna XB G8 G9 K10 E23 K24 R66 K69 K74 F75 A77 K78 V79 Q80 Y81 R83 K84 K85 G86 H87 Q89 P90 G8 G9 K10 E23 K24 R66 K69 K74 F75 A77 K78 V79 Q80 Y81 R83 K84 K85 G86 H87 Q89 P90
BS02 MG XB G54 A55 G101 G54 A55 G101
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:5j4d, PDBe:5j4d, PDBj:5j4d
PDBsum5j4d
PubMed27107638
UniProtQ72HR2|RL21_THET2 Large ribosomal subunit protein bL21 (Gene Name=rplU)

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