Structure of PDB 8jdl Chain X

Receptor sequence

>8jdlX (length=175) Species: 9606 (Homo sapiens) [Search protein sequence]

KASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQL
KKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT
TAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIK
FPLPHRVLRRQHKPRFTTKRPNTFF

3D structure

PDB

8jdl Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.

Chain

Resolution

2.42 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	X	Q66 F68 K70 P72 R87 S88 H91 Y94 R95 R98 R111 G114 A115 R116 H117 R118 R120 R139 H146 D147 S148 P155 H156 R157 R160 H163 K164 P165 R166 T169 K170 P172 N173 T174 F175 F176	Q65 F67 K69 P71 R86 S87 H90 Y93 R94 R97 R110 G113 A114 R115 H116 R117 R119 R138 H145 D146 S147 P154 H155 R156 R159 H162 K163 P164 R165 T168 K169 P171 N172 T173 F174 F175
BS02	rna	X	S42 Y46 S49 K52 K53 K55 K56 S57 R120 H122	S41 Y45 S48 K51 K52 K54 K55 S56 R119 H121

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0016020	membrane
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8jdl, PDBe:8jdl, PDBj:8jdl
PDBsum	8jdl
PubMed	37992713
UniProt	Q02543\|RL18A_HUMAN Large ribosomal subunit protein eL20 (Gene Name=RPL18A)

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