Structure of PDB 6ukg Chain X

Receptor sequence

>6ukgX (length=258) Species: 735 (Haemophilus parahaemolyticus) [Search protein sequence]

MNWKEFEVFCVTYLNKTYGNKFAKKGESDSTTSDILFTGNNPFYIEAKMP
HSQCGQFVLIPNRAEYKFDYSPKNKSEINPYTQKIMQFMSENFSEYANLS
TKGKIIPLPESVFVNWIKEYYKSKSVKFFITSNGDFIIFPIEHFEHYFNV
SCTYRIKKSGSRHLNSKSLPDFKQALDKKGISYTMRGLELHSDENIHDKR
ISGDDKDFLIKENNGAYHVKILSNTFNANVIFSISLKNNISLFILNEDRK
AFEAAISL

3D structure

PDB

6ukg Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 angstrom.

Chain

Resolution

1.16 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	X	N2 W3 S30 D34 E46 K48 M49 H51 S52 Q53 Q56 V58 S71 K73 N74 K75 Y120 K157 S159 G160 R162 N165 K167 T225 N227	N2 W3 S30 D34 E46 K48 M49 H51 S52 Q53 Q56 V58 S71 K73 N74 K75 Y120 K157 S159 G160 R162 N165 K167 T225 N227
BS02	dna	X	E27 S28 D29 T101 K102 R155 K157 K158 S159 G160 S161 R200 K220	E27 S28 D29 T101 K102 R155 K157 K158 S159 G160 S161 R200 K220

External links

PDB	RCSB:6ukg, PDBe:6ukg, PDBj:6ukg
PDBsum	6ukg
PubMed	31879785

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