Structure of PDB 6gej Chain X

Receptor sequence
>6gejX (length=442) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
TRTAAHTHIKGLGLDESGVAKRVEGGFVGQIEAREACGVIVDLIKAKKMS
GRAILLAGGPSTGKTALALAISQELGPKVPFCPLVGSELYSVEVKKTETL
MENFRRAIGLRIKETKEVYEGEVTELTPEDAENPLGGYGKTISHVIVGLK
SAKGTKTLRLDPTIYESIQREKVSIGDVIYIEANTGAVKRVGRSDAYATE
FDLETEEYVPLPKGEVHKKKEIVQDVTLHDLDVANARPQGGQDVISMMGQ
LLKPKKTEITEKLRQEVNKVVAKYIDQGVAELIPGVLFIDEVNMLDIEIF
TYLNKALESNIAPVVVLASNRGMTTVRGTEDVISPHGVPPDLIDRLLIVR
TLPYDKDEIRTIIERRATVERLQVESSALDLLATMGTETSLRYALQLLAP
CGILAQTSNRKEIVVNDVNEAKLLFLDAKRSTKILETSANYL
3D structure
PDB6gej Structure and dynamics of the yeast SWR1-nucleosome complex.
ChainX
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.12: DNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP X H29 G47 F48 V49 P81 S82 G84 K85 T86 Y375 I383 R413 H8 G26 F27 V28 P60 S61 G63 K64 T65 Y354 I362 R392
Gene Ontology
Molecular Function
GO:0003678 DNA helicase activity
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008094 ATP-dependent activity, acting on DNA
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
GO:0043138 3'-5' DNA helicase activity
GO:0043139 5'-3' DNA helicase activity
Biological Process
GO:0000492 box C/D snoRNP assembly
GO:0006281 DNA repair
GO:0006325 chromatin organization
GO:0006338 chromatin remodeling
GO:0006355 regulation of DNA-templated transcription
GO:0006357 regulation of transcription by RNA polymerase II
GO:0032508 DNA duplex unwinding
GO:0050821 protein stabilization
Cellular Component
GO:0000785 chromatin
GO:0000812 Swr1 complex
GO:0005634 nucleus
GO:0031011 Ino80 complex
GO:0035267 NuA4 histone acetyltransferase complex
GO:0097255 R2TP complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6gej, PDBe:6gej, PDBj:6gej
PDBsum6gej
PubMed30309918
UniProtQ03940|RUVB1_YEAST RuvB-like protein 1 (Gene Name=RVB1)

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