Structure of PDB 5gad Chain X

Receptor sequence

>5gadX (length=76) Species: 562 (Escherichia coli) [Search protein sequence]

TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTL
FAKADGKVKFEVKGPKNRKFISIEAE

3D structure

PDB

5gad Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.

Chain

Resolution

3.7 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	X	R11 N12 R14 D15 S16 E17 A18 K19 R20 L21 R25 F26 G27 E29 A33 G34 S35 I36 R39 R41 G42 T43 K44 G54 R55 D56 F60 F69 K75 R77 K78	R2 N3 R5 D6 S7 E8 A9 K10 R11 L12 R16 F17 G18 E20 A24 G25 S26 I27 R30 R32 G33 T34 K35 G45 R46 D47 F51 F60 K66 R68 K69
BS02	rna	X	K72 G73 P74 N76	K63 G64 P65 N67

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0019843	rRNA binding
GO:0043022	ribosome binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0001558	regulation of cell growth
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0042256	cytosolic ribosome assembly
GO:0090070	positive regulation of ribosome biogenesis
GO:1902626	assembly of large subunit precursor of preribosome

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:5gad, PDBe:5gad, PDBj:5gad
PDBsum	5gad
PubMed	26804923
UniProt	P0A7L8\|RL27_ECOLI Large ribosomal subunit protein bL27 (Gene Name=rpmA)