Structure of PDB 4d5l Chain X

Receptor sequence

>4d5lX (length=134) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

LRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVG
VEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFG
RKGHAVGDIPGVRFKVVKVANVSLLALYKGKKER

3D structure

PDB

4d5l Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.

Chain

Resolution

9.0 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	X	R8 T9 R17 R18 Q20 K21 W22 H23 D24 K28 H31 L36 S45 H46 A47 K48 K60 N63 I75 K76 K80 P86 D88 G104 R107 H110 V112 D114 K124 S129 K138	R2 T3 R11 R12 Q14 K15 W16 H17 D18 K22 H25 L30 S39 H40 A41 K42 K54 N57 I69 K70 K74 P80 D82 G98 R101 H104 V106 D108 K118 S123 K132

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005791	rough endoplasmic reticulum
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4d5l, PDBe:4d5l, PDBj:4d5l
PDBsum	4d5l
PubMed	25601755
UniProt	G1SZ47\|RS23_RABIT Small ribosomal subunit protein uS12 (Gene Name=RPS23)