Structure of PDB 5lzu Chain WW

Receptor sequence

>5lzuWW (length=129) Species: 9986 (Oryctolagus cuniculus)

VRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFE
IIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGF
IVLTTSAGIMDHEEARRKHTGGKILGFFF

3D structure

• PDB: 5lzu Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes.
• Chain: WW
• Resolution: 3.75 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	WW	V2 M4 V6 D9 N16 K19 R20 K22 R28 S31 K32 R57 A58 K71 V74 I75 S76 R78 D80 Q82 L83 K88 W89 L93 T105 T106 S107 I110 H120 G122 K124 F130	V1 M3 V5 D8 N15 K18 R19 K21 R27 S30 K31 R56 A57 K70 V73 I74 S75 R77 D79 Q81 L82 K87 W88 L92 T104 T105 S106 I109 H119 G121 K123 F129

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005634 nucleus
• GO:0005730 nucleolus
• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022626 cytosolic ribosome
• GO:0022627 cytosolic small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:5lzu, PDBe:5lzu, PDBj:5lzu
• PDBsum: 5lzu
• PubMed: 27863242
• UniProt: G1TG89|RS15A_RABIT Small ribosomal subunit protein uS8 (Gene Name=RPS15A)