Structure of PDB 6hcm Chain W3

Receptor sequence
>6hcmW3 (length=106) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQIN
WTVLYRRKHKKGQQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEA
KKAKQA
3D structure
PDB6hcm ZNF598 Is a Quality Control Sensor of Collided Ribosomes.
ChainW3
Resolution6.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna W3 R80 A81 I82 K119 R65 A66 I67 K104
BS02 rna W3 H17 R19 K35 S38 N50 W51 R56 K61 H17 R19 K35 S38 N50 W51 R56 K61
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0010458 exit from mitosis
GO:0021554 optic nerve development
GO:0031290 retinal ganglion cell axon guidance
GO:0060041 retina development in camera-type eye
Cellular Component
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:0022626 cytosolic ribosome
GO:0045202 synapse
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6hcm, PDBe:6hcm, PDBj:6hcm
PDBsum6hcm
PubMed30293783
UniProtG1SE28|RL24_RABIT Large ribosomal subunit protein eL24 (Gene Name=RPL24)

[Back to BioLiP]