Structure of PDB 8rjd Chain W

Receptor sequence
>8rjdW (length=63) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQIN
WTVLYRRKHKKGQ
3D structure
PDB8rjd UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
ChainW
Resolution2.78574 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna W G16 G18 R19 A34 K35 S38 R44 Q48 N50 W51 R56 K61 G16 G18 R19 A34 K35 S38 R44 Q48 N50 W51 R56 K61
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0010458 exit from mitosis
GO:0021554 optic nerve development
GO:0031290 retinal ganglion cell axon guidance
GO:0060041 retina development in camera-type eye
Cellular Component
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:0022626 cytosolic ribosome
GO:0045202 synapse
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8rjd, PDBe:8rjd, PDBj:8rjd
PDBsum8rjd
PubMed38896445
UniProtG1SE28|RL24_RABIT Large ribosomal subunit protein eL24 (Gene Name=RPL24)

[Back to BioLiP]