Structure of PDB 8ine Chain W

Receptor sequence

>8ineW (length=101) Species: 9606 (Homo sapiens) [Search protein sequence]

VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQ
TKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG
Q

3D structure

PDB

8ine Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles.

Chain

Resolution

3.2 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	W	V2 N3 P5 R8 R9 F11 K17 H18 Y26 K28 G29 S32 Y34 A35 Q36 G37 R39 R40 R43 K44 Y48 G50 P54 I55 F56 A60 K61 K64 K65 K80 R81 K86 K89 K97 K98 K100	V1 N2 P4 R7 R8 F10 K16 H17 Y25 K27 G28 S31 Y33 A34 Q35 G36 R38 R39 R42 K43 Y47 G49 P53 I54 F55 A59 K60 K63 K64 K79 R80 K85 K88 K96 K97 K99

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005829	cytosol
GO:0005840	ribosome
GO:0005886	plasma membrane
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:8ine, PDBe:8ine, PDBj:8ine
PDBsum	8ine
PubMed	37491604
UniProt	P83881\|RL36A_HUMAN Large ribosomal subunit protein eL42 (Gene Name=RPL36A)