Structure of PDB 8cen Chain W

Receptor sequence
>8cenW (length=304) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
DRPIDDIVKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINK
TELGPLIARLRSDRLISIHKQREYPPNSKSVERVYYYVKYPHAIDAIKWK
VHQVVQRLKDDLDKNSEPNGYMCPICLTKYTQLEAVQLLNFDRTEFLCSL
CDEPLVEDDSGKKNKEKQDKLNRLMDQIQPIIDSLKKIDDSRIEENTFEI
ALARLIPPQNQSHAAYTYNPKKGSTMATLHINITTASDEVAQRELQERQA
EEKRKQNAVPEWHKQSTIGKTALGREERENEKTLNDYYAALAKKQALEDE
FEDV
3D structure
PDB8cen Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain.
ChainW
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna W N50 K51 T52 N49 K50 T51
BS02 dna W R73 Y75 S81 V82 E83 R72 Y74 S80 V81 E82
BS03 ZN W C124 C127 C149 C152 C123 C126 C148 C151
Gene Ontology
Molecular Function
GO:0000993 RNA polymerase II complex binding
GO:0001097 TFIIH-class transcription factor complex binding
GO:0003697 single-stranded DNA binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0001113 transcription open complex formation at RNA polymerase II promoter
GO:0006366 transcription by RNA polymerase II
GO:0006367 transcription initiation at RNA polymerase II promoter
Cellular Component
GO:0005634 nucleus
GO:0005673 transcription factor TFIIE complex
GO:0005739 mitochondrion
GO:0097550 transcription preinitiation complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8cen, PDBe:8cen, PDBj:8cen
PDBsum8cen
PubMed37014863
UniProtP36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha (Gene Name=TFA1)

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