Structure of PDB 7dz8 Chain W

Receptor sequence

>7dz8W (length=220) Species: 3055 (Chlamydomonas reinhardtii) [Search protein sequence]

IEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYR
ELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNY
LGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFD
PLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDH
LANPTAVNAFAYATKFTPSA

3D structure

PDB

7dz8 Structural basis of LhcbM5-mediated state transitions in green algae.

Chain

Resolution

3.16 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CHL	W	F239 A242 T243 F245 T246	F210 A213 T214 F216 T217
BS02	CHL	W	K39 F40 L41 G42 F44 Y61 W63 F206	K10 F11 L12 G13 F15 Y32 W34 F177
BS03	CLA	W	L53 G59 D60 Y61 W63 L68 F75 Y78 R79 L81 E82 R202 M205	L24 G30 D31 Y32 W34 L39 F46 Y49 R50 L52 E53 R173 M176
BS04	CLA	W	Y78 L81 H85	Y49 L52 H56
BS05	CLA	W	W88 L91 G95 T98 P99 F109 L127 Y129	W59 L62 G66 T69 P70 F80 L98 Y100
BS06	CHL	W	N134 L135 I136 H137 S140	N105 L106 I107 H108 S111
BS07	CHL	W	W88 L127 F147 Q148 M152	W59 L98 F118 Q119 M123
BS08	CHL	W	F115 K116 G118 A119 F122 Q148 F212	F86 K87 G89 A90 F93 Q119 F183
BS09	CHL	W	R87 W88 A155 Y158 R159 G163 P164 L165 G166 P174 F178	R58 W59 A126 Y129 R130 G134 P135 L136 G137 P145 F149
BS10	CHL	W	E80 L81 I84 H85 W88 M152 E156 R159	E51 L52 I55 H56 W59 M123 E127 R130
BS11	CLA	W	R87 M90 L91 H173 P174 G175 L183 F190 L193 K194 E197	R58 M61 L62 H144 P145 G146 L154 F161 L164 K165 E168
BS12	CLA	W	W32 K196 K199 N200	W3 K167 K170 N171
BS13	CLA	W	K196 N200 L203	K167 N171 L174
BS14	CLA	W	F206 S207 G210 V213 Q214 V217 T218 N225 L226 H229 N237 A238 Y241	F177 S178 G181 V184 Q185 V188 T189 N196 L197 H200 N208 A209 Y212
BS15	CLA	W	H229 L230 P233 N237	H200 L201 P204 N208

Gene Ontology

	Molecular Function
GO:0016168	chlorophyll binding

	Biological Process
GO:0009416	response to light stimulus
GO:0009765	photosynthesis, light harvesting
GO:0009768	photosynthesis, light harvesting in photosystem I
GO:0015979	photosynthesis

	Cellular Component
GO:0009507	chloroplast
GO:0009522	photosystem I
GO:0009523	photosystem II
GO:0009535	chloroplast thylakoid membrane
GO:0009579	thylakoid
GO:0016020	membrane

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:7dz8, PDBe:7dz8, PDBj:7dz8
PDBsum	7dz8
PubMed	34239095
UniProt	Q93WE0

[Back to BioLiP]