Structure of PDB 6ylx Chain W

Receptor sequence
>6ylxW (length=234) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYRYVWVLHLDDVRT
PVLQEIRTSWAGSKLIMGKRKVLQKALGEKREEEYKENLYQLSKLCSGVT
GLLFTDEDVNTVKEYFKSYVRSDYSRPNTKAPLTFTIPEGIVYSRGGQIP
AEEDVPMIHSLEPTMRNKFEIPTKIKAGKITIDSPYLVCTEGEKLDVRQA
LILKQFGIAASEFKVKVSAYYDNDSSTVESTNIN
3D structure
PDB6ylx Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
ChainW
Resolution3.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna W M1 R3 S4 K5 R6 S7 K8 A13 T15 D16 K17 K18 R20 K23 V48 T50 Q54 R57 K64 I66 M67 K69 R70 K71 K75 R126 M1 R3 S4 K5 R6 S7 K8 A13 T15 D16 K17 K18 R20 K23 V48 T50 Q54 R57 K64 I66 M67 K69 R70 K71 K75 R126
Gene Ontology
Molecular Function
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0000055 ribosomal large subunit export from nucleus
GO:0000956 nuclear-transcribed mRNA catabolic process
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0030687 preribosome, large subunit precursor
GO:0032040 small-subunit processome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ylx, PDBe:6ylx, PDBj:6ylx
PDBsum6ylx
PubMed32668200
UniProtP33201|MRT4_YEAST Ribosome assembly factor MRT4 (Gene Name=MRT4)

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