Structure of PDB 6ppk Chain W

Receptor sequence

>6ppkW (length=252) Species: 1423 (Bacillus subtilis) [Search protein sequence]

WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRI
MLLNKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK
FDRMPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTLELLDTP
GILWPKFVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGL
DEIPEDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSF
EQ

3D structure

PDB

6ppk Structural consequences of the interaction of RbgA with a 50S ribosomal subunit assembly intermediate.

Chain

Resolution

4.4 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	W	P7 K12 N144 G149 K196 S198 I199 R224 R245 G246 S250 G251 D257 K258 E261 R265 K271	P3 K8 N131 G136 K169 S171 I172 R197 R218 G219 S223 G224 D230 K231 E234 R238 K244
BS02	GNP	W	N58 K59 S87 P129 N130 G132 K133 S134 T135 T148 P152 G153	N54 K55 S80 P116 N117 G119 K120 S121 T122 T135 P139 G140

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003924	GTPase activity
GO:0005525	GTP binding
GO:0016787	hydrolase activity

	Biological Process
GO:0006412	translation
GO:0042254	ribosome biogenesis

	Cellular Component
GO:0005737	cytoplasm

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6ppk, PDBe:6ppk, PDBj:6ppk
PDBsum	6ppk
PubMed	31665744
UniProt	O31743\|RBGA_BACSU Ribosome biogenesis GTPase A (Gene Name=rbgA)

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