Structure of PDB 5njt Chain W

Receptor sequence

>5njtW (length=275) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence]

AIKKYKPTSNGRRGMTTSDFAEITTDKPEKSLLAPLHKKGGRNNQGKLTV
RHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADGEK
RYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKG
GQLVRSAGTSAQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHE
LINIGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAPIGRKSPMSPWG
KPTLGFKTRKKKNKSDKFIVRRRKN

3D structure

PDB

5njt Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Chain

Resolution

3.8 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	W	R175 L202	R174 L201
BS02	rna	W	K7 P8 S10 N11 G12 R13 R14 T18 F21 D27 K31 P36 H38 K39 G42 R43 N44 N45 Q46 G47 K48 L49 T50 V51 R52 H53 K59 Q61 Y62 R63 I74 Y83 P85 R87 D98 G99 E100 K101 K147 K150 Q153 L154 V155 R156 S157 A158 N177 S178 E180 E198 H200 E201 I205 G206 K207 A208 R210 R212 W213 R217 P218 T219 V220 R221 G222 V224 M225 N226 P227 N228 D229 G234 G235 E236 G237 R238 P240 I241 G242 R243 K244 S245 S248 P249 W250 K252 T254 L255 G256 F257 K258 T259 R260 K263 R273 R274	K6 P7 S9 N10 G11 R12 R13 T17 F20 D26 K30 P35 H37 K38 G41 R42 N43 N44 Q45 G46 K47 L48 T49 V50 R51 H52 K58 Q60 Y61 R62 I73 Y82 P84 R86 D97 G98 E99 K100 K146 K149 Q152 L153 V154 R155 S156 A157 N176 S177 E179 E197 H199 E200 I204 G205 K206 A207 R209 R211 W212 R216 P217 T218 V219 R220 G221 V223 M224 N225 P226 N227 D228 G233 G234 E235 G236 R237 P239 I240 G241 R242 K243 S244 S247 P248 W249 K251 T253 L254 G255 F256 K257 T258 R259 K262 R272 R273

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0016740	transferase activity
GO:0019843	rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Cellular Component

External links

PDB	RCSB:5njt, PDBe:5njt, PDBj:5njt
PDBsum	5njt
PubMed	28468753
UniProt	P42919\|RL2_BACSU Large ribosomal subunit protein uL2 (Gene Name=rplB)

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