Structure of PDB 5mdy Chain W

Receptor sequence
>5mdyW (length=76) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTL
FAKADGKVKFEVKGPKNRKFISIEAE
3D structure
PDB5mdy Translational termination without a stop codon.
ChainW
Resolution3.35 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna W T10 N12 R14 D15 S16 E17 A18 K19 R20 K24 F26 G27 L32 A33 G34 S35 I36 R41 G42 T43 G54 R55 H57 T58 F60 F69 K75 R77 T1 N3 R5 D6 S7 E8 A9 K10 R11 K15 F17 G18 L23 A24 G25 S26 I27 R32 G33 T34 G45 R46 H48 T49 F51 F60 K66 R68
BS02 rna W G73 P74 N76 G64 P65 N67
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0043022 ribosome binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0001558 regulation of cell growth
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0042256 cytosolic ribosome assembly
GO:0090070 positive regulation of ribosome biogenesis
GO:1902626 assembly of large subunit precursor of preribosome
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5mdy, PDBe:5mdy, PDBj:5mdy
PDBsum5mdy
PubMed27934701
UniProtP0A7L8|RL27_ECOLI Large ribosomal subunit protein bL27 (Gene Name=rpmA)

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