Structure of PDB 9bkd Chain V

Receptor sequence
>9bkdV (length=184) Species: 9606 (Homo sapiens) [Search protein sequence]
DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQ
CPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNA
IINSGPREDSTRIGRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIA
ECLADELINAAKGSSNSYAIKKKDELERVAKSNR
3D structure
PDB9bkd Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit.
ChainV
Resolution2.6 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna V H51 A57 R60 K63 N74 M76 M77 M78 H79 G80 R81 N82 N83 G84 K85 K86 L87 M88 N148 R159 F163 R164 I166 I169 H36 A42 R45 K48 N59 M61 M62 M63 H64 G65 R66 N67 N68 G69 K70 K71 L72 M73 N128 R139 F143 R144 I146 I149
External links
PDB RCSB:9bkd, PDBe:9bkd, PDBj:9bkd
PDBsum9bkd
PubMed39117603
UniProtP46782|RS5_HUMAN Small ribosomal subunit protein uS7 (Gene Name=RPS5)

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