Structure of PDB 8s1u Chain V

Receptor sequence
>8s1uV (length=249) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence]
SDIYQHFRKDERAFIDQALEWKRIVQEQYRMKLTDFLDPREQVILSAVTG
QVGLAFSGGYDRAERKRAILFPEYITPEESDFELQAFNVRYADKFVSVDH
RSLLGALMGIGLKRQKFGDIVFSETAVQLIVSADTADFVAAQLTQAGKAA
VSLEKIDLSDLNIVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLV
KVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRVTFERQ
3D structure
PDB8s1u A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis.
ChainV
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna V R192 K246 R185 K239
BS02 rna V D3 Q6 H7 G51 Q52 S179 S180 R182 S194 R195 Q199 D2 Q5 H6 G50 Q51 S172 S173 R175 S187 R188 Q192
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0042274 ribosomal small subunit biogenesis
Cellular Component
GO:0015935 small ribosomal subunit

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8s1u, PDBe:8s1u, PDBj:8s1u
PDBsum8s1u
PubMed38811035
UniProtP71020|YLMH_BACSU Putative RNA-binding protein YlmH (Gene Name=ylmH)

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