Structure of PDB 8pj1 Chain V

Receptor sequence
>8pj1V (length=189) Species: 9606 (Homo sapiens) [Search protein sequence]
DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQ
CPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNA
IINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN
IKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR
3D structure
PDB8pj1 Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining
ChainV
Resolution3.4 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna V R130 R135 R115 R120
BS02 rna V H51 A57 K59 R60 K63 N74 M76 H79 G80 R81 N82 N83 G84 K85 M88 R145 N148 R159 F163 R164 I166 T168 I169 H36 A42 K44 R45 K48 N59 M61 H64 G65 R66 N67 N68 G69 K70 M73 R130 N133 R144 F148 R149 I151 T153 I154
BS03 MG V N165 K167 N150 K152
External links
PDB RCSB:8pj1, PDBe:8pj1, PDBj:8pj1
PDBsum8pj1
PubMed
UniProtP46782|RS5_HUMAN Small ribosomal subunit protein uS7 (Gene Name=RPS5)

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