Structure of PDB 8kd5 Chain V

Receptor sequence
>8kd5V (length=91) Species: 8355 (Xenopus laevis) [Search protein sequence]
TRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLA
HYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYT
3D structure
PDB8kd5 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex.
ChainV
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna V T29 Y39 I51 S52 S53 R83 S84 T1 Y11 I23 S24 S25 R55 S56
BS02 dna V R30 I36 Y37 R2 I8 Y9
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

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Molecular Function
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Cellular Component
External links
PDB RCSB:8kd5, PDBe:8kd5, PDBj:8kd5
PDBsum8kd5
PubMed37666978
UniProtP02281|H2B11_XENLA Histone H2B 1.1

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