Structure of PDB 8jdj Chain V

Receptor sequence

>8jdjV (length=187) Species: 9606 (Homo sapiens) [Search protein sequence]

GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRL
FMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVC
ALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRH
FGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYKN

3D structure

PDB

8jdj Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.

Chain

Resolution

2.5 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	V	G2 H7 N8 D10 R11 K12 V13 R14 R15 S20 K30 F34 R37 R38 T42 F43 M53 S54 R55 T56 S62 S64 R65 R68 K71 L72 P73 R75 K78 T85 T87 D88 D89 V90 R91 R104 T106 S107 R108 C134 G135 T136 L138 S140 R143 K144 G145 R146 E147 V148 R150 F152 P159 H160 H162 K164 P165 Y166 R168 K170 R172 K173 R176 R178 R181 S183 R184 G185 Y186 K187 N188	G1 H6 N7 D9 R10 K11 V12 R13 R14 S19 K29 F33 R36 R37 T41 F42 M52 S53 R54 T55 S61 S63 R64 R67 K70 L71 P72 R74 K77 T84 T86 D87 D88 V89 R90 R103 T105 S106 R107 C133 G134 T135 L137 S139 R142 K143 G144 R145 E146 V147 R149 F151 P158 H159 H161 K163 P164 Y165 R167 K169 R171 K172 R175 R177 R180 S182 R183 G184 Y185 K186 N187
BS02	MG	V	H160 H162	H159 H161
BS03	MG	V	T158 N188	T157 N187

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005791	rough endoplasmic reticulum
GO:0005829	cytosol
GO:0005840	ribosome
GO:0005925	focal adhesion
GO:0016020	membrane
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:0043232	intracellular non-membrane-bounded organelle
GO:1990904	ribonucleoprotein complex

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Cellular Component

External links

PDB	RCSB:8jdj, PDBe:8jdj, PDBj:8jdj
PDBsum	8jdj
PubMed	37992713
UniProt	Q07020\|RL18_HUMAN Large ribosomal subunit protein eL18 (Gene Name=RPL18)

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