Structure of PDB 7dz8 Chain V

Receptor sequence

>7dz8V (length=238) Species: 3055 (Chlamydomonas reinhardtii) [Search protein sequence]

KKTIREKAGWWSNGGNEKLSAFYGPDRGLWLGPLSGTTPAYLTGEFPGDY
GWDSAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGTPIVE
PVWFKAGAQIFAEGGLDYLGNPGLVHAQSILATLAVQVILMGAIEGYRVN
GGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMFG
FFVQAIVTGKGPLANLDEHLASPFTSNAFTYAQKFTPQ

3D structure

PDB

7dz8 Structural basis of LhcbM5-mediated state transitions in green algae.

Chain

Resolution

3.16 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CHL	V	F259 A262 Q263 F265 T266	F229 A232 Q233 F235 T236
BS02	CHL	V	W60 W82 S84	W30 W52 S54
BS03	CHL	V	L59 W60 L61 G62 Y80 W82	L29 W30 L31 G32 Y50 W52
BS04	CLA	V	L72 G78 D79 Y80 W82 D83 L87 S88 Y97 R98 E101 H104 R222 M225	L42 G48 D49 Y50 W52 D53 L57 S58 Y67 R68 E71 H74 R192 M195
BS05	CLA	V	L100 H104 F232	L70 H74 F202
BS06	CLA	V	W107 L110 G114 T117 I128 Q139 Y148 V155	W77 L80 G84 T87 I98 Q109 Y118 V125
BS07	CHL	V	G153 L154 V155 H156 A157	G123 L124 V125 H126 A127
BS08	CHL	V	W107 G137 T163 Q167	W77 G107 T133 Q137
BS09	CHL	V	F134 K135 G137 A138 F141 I160 Q167	F104 K105 G107 A108 F111 I130 Q137
BS10	CHL	V	R106 W107 Y177 R178 G182 P183 A184 F198	R76 W77 Y147 R148 G152 P153 A154 F168
BS11	CHL	V	E99 L100 I103 H104 W107 Q167 M171 G172 E175 R178	E69 L70 I73 H74 W77 Q137 M141 G142 E145 R148
BS12	CLA	V	R106 M109 L110 H192 P193 G194 F198 L203 A204 F210 L213 K214 E217	R76 M79 L80 H162 P163 G164 F168 L173 A174 F180 L183 K184 E187
BS13	CLA	V	F52 K216 K219 N220	F22 K186 K189 N190
BS14	CLA	V	K216 N220 L223	K186 N190 L193
BS15	CLA	V	F226 F229 G230 Q234 N245 H249 S256 A258 Y261	F196 F199 G200 Q204 N215 H219 S226 A228 Y231
BS16	CLA	V	H249 P253 F254	H219 P223 F224

Gene Ontology

	Molecular Function
GO:0016168	chlorophyll binding

	Biological Process
GO:0009416	response to light stimulus
GO:0009765	photosynthesis, light harvesting
GO:0009768	photosynthesis, light harvesting in photosystem I
GO:0015979	photosynthesis

	Cellular Component
GO:0009507	chloroplast
GO:0009522	photosystem I
GO:0009523	photosystem II
GO:0009535	chloroplast thylakoid membrane
GO:0009579	thylakoid
GO:0016020	membrane

View graph for
Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:7dz8, PDBe:7dz8, PDBj:7dz8
PDBsum	7dz8
PubMed	34239095
UniProt	Q9ZSJ4

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