Structure of PDB 6spf Chain V

Receptor sequence
>6spfV (length=188) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence]
FIVNAQVRSDLGKGASRRLRRNAGLVPAVVYGGDKEPQSVTLELREIAKL
LENEAAFSHVIALNVGGVKETVLIKALQRHPAKGFVMHADFLRVVADHKL
TAHVPLHFINEEVAVGVKQAGGEISHTISEVEVSCLPKDLPEFIEVDMAK
VELGQIVHLSDLKAPKGVELVQLAHGNDLAVANIHASR
3D structure
PDB6spf Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate.
ChainV
Resolution2.89 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna V R48 I159 N180 N186 R45 I156 N177 N183
BS02 rna V R11 L14 G15 K16 S19 R20 R21 R23 R24 V32 Y34 P40 H91 H178 R8 L11 G12 K13 S16 R17 R18 R20 R21 V29 Y31 P37 H88 H175
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6spf, PDBe:6spf, PDBj:6spf
PDBsum6spf
PubMed31611393
UniProtA0A072ZBM5

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