Structure of PDB 6p5n Chain V

Receptor sequence
>6p5nV (length=100) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRK
TPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIA
3D structure
PDB6p5n The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs.
ChainV
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna V R21 K30 E33 K51 G52 P53 V54 M56 P57 K59 R62 K67 T68 C70 G71 E72 G73 S74 K75 T76 W77 R79 R83 H85 K86 R87 R4 K13 E16 K34 G35 P36 V37 M39 P40 K42 R45 K50 T51 C53 G54 E55 G56 S57 K58 T59 W60 R62 R66 H68 K69 R70
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:6p5n, PDBe:6p5n, PDBj:6p5n
PDBsum6p5n
PubMed31609474
UniProtG1SIZ2|RS20_RABIT Small ribosomal subunit protein uS10 (Gene Name=RPS20)

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