Structure of PDB 6n8o Chain V

Receptor sequence
>6n8oV (length=392) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
HQHQNAATLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFC
RNCERFLQPPGQWIRAELESRELLAICLRRLKGLTKVRLVDASFIWTEPH
SRRIRIKLTVQGEAMTNTIIQQTFEVEYIVIAMQCPDCARSYTNTWRATV
QIRQKVPHKRTFLFLEQLILKHNAHVDTISISEAKDGLDFFYAQKNHAVK
MIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPICKDDLVVL
PKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNAL
ADVTQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHL
GGICHAGDSVMGYFIANSNYNSDLFDGLNIDYVPDVVLVKKL
3D structure
PDB6n8o Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome.
ChainV
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna V L82 Q160 R162 N205 S225 E226 E227 S230 Q231 H234 Y240 F242 S245 K265 N269 K278 T282 D295 R303 N380 L74 Q151 R153 N196 S216 E217 E218 S221 Q222 H225 Y231 F233 S236 K256 N260 K269 T273 D286 R294 N371
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0030674 protein-macromolecule adaptor activity
GO:0043023 ribosomal large subunit binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0000055 ribosomal large subunit export from nucleus
GO:0015031 protein transport
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6n8o, PDBe:6n8o, PDBj:6n8o
PDBsum6n8o
PubMed30814529
UniProtP38861|NMD3_YEAST 60S ribosomal export protein NMD3 (Gene Name=NMD3)

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