Structure of PDB 3j7r Chain V

Receptor sequence

>3j7rV (length=131) Species: 9823 (Sus scrofa)

SGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGD
MVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNK
GEMKGSAITGPVAKECADLWPRIASNAGSIA

3D structure

• PDB: 3j7r Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.
• Chain: V
• Resolution: 3.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	V	S10 G11 A12 K13 F14 R15 S17 G19 P21 A24 V25 I40 S41 G44 I45 K46 G47 R48 L49 N50 R51 L52 M62 T64 V76 R85 K86 R89 F95	S1 G2 A3 K4 F5 R6 S8 G10 P12 A15 V16 I31 S32 G35 I36 K37 G38 R39 L40 N41 R42 L43 M53 T55 V67 R76 K77 R80 F86
BS02	rna	V	K35 K67 P70 S134	K26 K58 P61 S125

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed May 7 01:11:50 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1471                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1472         else:

=> 1473             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1474     

   1475     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '3j7r', asym_id = 'V', title = 'Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='3j7r', asym_id='V', title='Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.')

    840 

    841     if go:

=>  842         display_go(go,uniprot,pdbid,asym_id)

    843     return pubmed,uniprot

    844 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '3j7r', asym_id = 'V'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='3j7r', asym_id='V')

    481         '''.replace("$namespace_link",namespace_link

    482           ).replace("$namespace",namespace

=>  483           ).replace("$uniprot",u

    484         ))

    485         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>