Structure of PDB 6zqd Chain UX

Receptor sequence
>6zqdUX (length=167) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
AKKTRKFGLVKRTLNTKKTRNIPQVSSALFFQYNQAIKPPYQVLIDTNFI
NFSIQKKVDIVRGMMDCLLAKCNPLITDCVMAELEKLGPKYRIALKLARD
PRIKRLSCSHKGTYADDCLVHRVLQHKCYIVATNDAGLKQRIRKIPGIPL
MSVGGHAYVIEKLPDVF
3D structure
PDB6zqd 90 S pre-ribosome transformation into the primordial 40 S subunit.
ChainUX
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna UX R42 I76 Q77 K112 Y113 R114 I115 A116 Q162 H178 R20 I54 Q55 K90 Y91 R92 I93 A94 Q140 H156
BS02 ZN UX C130 H132 C140 C108 H110 C118
Gene Ontology
Molecular Function
GO:0004521 RNA endonuclease activity
GO:0004540 RNA nuclease activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
Biological Process
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0032040 small-subunit processome

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Molecular Function
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Cellular Component
External links
PDB RCSB:6zqd, PDBe:6zqd, PDBj:6zqd
PDBsum6zqd
PubMed32943521
UniProtQ05498|FCF1_YEAST rRNA-processing protein FCF1 (Gene Name=FCF1)

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