Structure of PDB 6rxy Chain UR

Receptor sequence

>6rxyUR (length=447) Species: 209285 (Thermochaetoides thermophila) [Search protein sequence]

AEKDAEEEELEKFVLGAKETFREQLFRDAPAWEDSDDERLTISLAGATRL
RKLRISESEDLVSGIEYARRLRQQYLRLYPQPDWAKPLPLDSFLRDANSF
KVRRKLRPETIDIQRTRDIPDTHKAAISSLAFHPRYPILLSSSTSSIMYL
HKLDASAYPTPNPLLTSVHVKRTDLRRAAFVGPDGGEIIFAGRRRYFHCW
NLSSGLVKKVSKIQGHQKEQRTMERFRVSPCGRYMALVASDKKGGGMLNI
INVGTMQWIAQARIDGRHGVADFAWWSDGNGLTIAGRDGQVTEWSMITRR
TVGIWRDEGSIGGTVMALGGRNGPAELGGDRWVAIGSNSGILNVYDRNDL
IEIRIKKYPTPTRVFEQLTTSISVVAFSPDGQLLAFGSQHKKDALRLVHL
PSCTVYRNWPTEQTPLGRVTAIAFSSKSDVLAVGNDVGRVRLWEIRG

3D structure

PDB

6rxy Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.

Chain

Resolution

4.7 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	UR	R153 R155 K156 Q178 D262 I263 R322 R343 R344 R345 Y346 S361 K362 Q367 S390 K392 K393 H418 R437 S542 H561 K562 N579 E583 Q584 T585 R589	R49 R51 K52 Q74 D112 I113 R172 R193 R194 R195 Y196 S211 K212 Q217 S240 K242 K243 H268 R287 S371 H390 K391 N408 E412 Q413 T414 R418
BS02	rna	UR	Q538 R567 Y577 R578	Q367 R396 Y406 R407

Gene Ontology

	Biological Process
GO:0006364	rRNA processing

	Cellular Component
GO:0005730	nucleolus
GO:0032040	small-subunit processome
GO:0034388	Pwp2p-containing subcomplex of 90S preribosome

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Biological Process

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Cellular Component

External links

PDB	RCSB:6rxy, PDBe:6rxy, PDBj:6rxy
PDBsum	6rxy
PubMed	31378463
UniProt	G0SBN9

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