Structure of PDB 6zqc Chain UD

Receptor sequence
>6zqcUD (length=675) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
ERMIVHRCRFVDFTPATITSLAFSHKSNINKLTPSDLRLAIGRSNGNIEI
WNPRNNWFQEMVIEGGKDRSIEGLCWSNVNGESLRLFSIGGSTVVTEWDL
ATGLPLRNYDCNSGVIWSISINDSQDKLSVGCDNGTVVLIDISGGPGVLE
HDTILMRQEARVLTLAWKKDDFVIGGCSDGRIRIWSAQKNDENMGRLLHT
MKVDKAKKESTLVWSVIYLPRTDQIASGDSTGSIKFWDFQFATLNQSFKA
HDADVLCLTTDTDNNYVFSAGVDRKIFQFSQNTNKSQKNNRWVNSSNRLL
HGNDIRAICAYQSKGADFLVSGGVEKTLVINSLTSFSNGNYRKMPTVEPY
SKNVLVNKEQRLVVSWSESTVKIWTMGNYKLVCKLTLKDDQNISTCSLSP
DGQVLVVGRPSTTKVFHLQPVGNKLKVTKLDNDLLLRTSTKLVKFIDNSK
IVICSCEDDVFIVDLPQEVELLEVTSTKSSIKVPYINRINHLEVDQNIAV
ISRGCGVVDILDLKARISKPLARLNNFITAVHINTSRKSVVVITADNKIY
EFNMNLNSESVLTQWSKNNTDNLPKEWKTLKENCVGIFSDIENSSRLWFW
GATWISRIDFDVDFPINGLTITDESNFMNHFFFTDKYKPLLFVDLISSNE
LAIIERNPLTFHSKQKAFIQPKLVF
3D structure
PDB6zqc 90 S pre-ribosome transformation into the primordial 40 S subunit.
ChainUD
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna UD K236 E237 K303 N325 L327 Q771 K208 E209 K275 N297 L299 Q670
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
GO:0045943 positive regulation of transcription by RNA polymerase I
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0032040 small-subunit processome
GO:0034455 t-UTP complex
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6zqc, PDBe:6zqc, PDBj:6zqc
PDBsum6zqc
PubMed32943521
UniProtQ06679|UTP4_YEAST U3 small nucleolar RNA-associated protein 4 (Gene Name=UTP4)

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