Structure of PDB 5y6p Chain U8

Receptor sequence

>5y6pU8 (length=277) Species: 35689 (Griffithsia pacifica) [Search protein sequence]

VVDPFQRKFQSIGKIGIDYSRPKKLATYKRVGYSVGLDFPNAVSMAGHYS
LTDCTRAGGAAKILMKYDEYCAKGMLQVYKRSAVSTGVYTTKCTEATQPG
VAYDVRVFNRTAAFRQAQKPVNVRLGEQYAARKACVTLAHNCSREEAQFK
NMPMSCATFLAGKMEAMGTCYRTVRPSSKAEDYMAGSVRMQVYQKGNASG
VYPVGGCEDGHAKGDADLRRVIALASEYRAAQQGAAAVTGAQYASSKMAI
QLYGHSCNHEEGQFCDYPAVAAAMCRY

3D structure

PDB

5y6p Structure of phycobilisome from the red alga Griffithsia pacifica

Chain

Resolution

3.5 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	PEB	U8	R151 F155 R156	R110 F114 R115
BS02	PEB	U8	Y111 Q118 R185	Y70 Q77 R144
BS03	PEB	U8	L265 Y269	L224 Y228
BS04	PEB	U8	Y224 M225 S228 H300	Y183 M184 S187 H259
BS05	PEB	U8	A87 G88 H89 Y90 S91 L92 A158 R165	A46 G47 H48 Y49 S50 L51 A117 R124
BS06	PEB	U8	C112 M116 C183 E186 Q189	C71 M75 C142 E145 Q148
BS07	PEB	U8	M225 V229 Q232 C298 E301 Q304	M184 V188 Q191 C257 E260 Q263
BS08	PVN	U8	K121 E206 C211 R260	K80 E165 C170 R219
BS09	PUB	U8	Y234 Y243 C248 D250 R261 A264 L265	Y193 Y202 C207 D209 R220 A223 L224
BS10	PUB	U8	N82 K121 V125 Y130 C134 E136 A143 Y144 R147 R151	N41 K80 V84 Y89 C93 E95 A102 Y103 R106 R110
BS11	PEB	U8	D44 Q47	D3 Q6
BS12	PEB	U8	I56 Y60 Y69	I15 Y19 Y28
BS13	PEB	U8	N163 G167 Y170	N122 G126 Y129

External links

PDB	RCSB:5y6p, PDBe:5y6p, PDBj:5y6p
PDBsum	5y6p
PubMed	29045394

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